Data management with databases
[ back ]
"It has been estimated that the amount of information in the world doubles
every 20 months and the size and number of databases are increasing even faster."
[1]
The groth statistics of the largest public databases:
[Source: GenomeNet, Kyoto University]
Most important public databases
for molecular biology
Primary Sequence DBs
(collaborative project)
- DDBJ
(DNA DataBase of Japan)
- EMBL Nucleotide DB
(European Molecular Biology Laboratory )
- GenBank
(National Center for Biotechnology Information)
Meta-DBs
- Entrez Gene
Unified retrival of gene-centred information (NCBI)
- euGenes
Assembled information on eukaryotic genomes (Univ. of Indiana)
- GeneCards
(Weizmann Inst.)
- GenLoc / UDB (Weizmann
Inst.)
- SOURCE
(Univ. of Stanford)
- LocusLink
(National Center for Biotechnology Information)
Genome Annotation Systems
- Ensembl
Genome BrowserAutomatically Annotated Genomes (EMBL-EBI and Wellcome Trust Sanger Inst.)
-
UniGene Automatic partitioning of GenBank sequences (NCBI)
-
Golden Path / UCSC (Univ. of California, Santa Cruz)
Specialized DBs
- CGAP
Cancer Genes (National Cancer Institute)
- Clone
Registry Clone Collections (National Center for Biotechnology Information)
- I.M.A.G.E
Clone Collections (Image Consortium)
- DBGET
H.sapiens, retrieval system (Univ. of Kyoto)
- DIP
Interacting Proteins (Univ. of California)
- GDB
(Human Genome Organization)
- KEGG
Functional Db (Univ. of Kyoto)
- MGI
Mouse Genome (Jackson Lab.)
- OMIM
Inherited Diseases (National Center for Biotechnology Information)
- SWISS-PROT
Protein Db (Swiss Institute of Bioinformatics)
- PEDANT
Protein Db (Forschungszentrum f. Umwelt & Gesundheit)
- List with SNP-Databases
- Reactome,
The Genome Knowledgebase (EBI)
Microarray-DBs
- ArrayExpress
(European Bioinformatic Institute)
- Gene Expression
Omnibus (National Center for Biotechnology Information)
- maxd
(Univ. of Manchester)
- SMD
(Univ. of Stanford)
Sources and more links
[1] Weizmann
institute of Science
[2] George Mason university:
Links and introduction
[3] Wikiverse.org - World of Knowledge
© F. Kokocinski, 1999 - 2008
no warranty or liability for content and contents of linked pages
(collaborative project)
- DDBJ (DNA DataBase of Japan)
- EMBL Nucleotide DB (European Molecular Biology Laboratory )
- GenBank (National Center for Biotechnology Information)
Meta-DBs
- Entrez Gene Unified retrival of gene-centred information (NCBI)
- euGenes Assembled information on eukaryotic genomes (Univ. of Indiana)
- GeneCards (Weizmann Inst.)
- GenLoc / UDB (Weizmann Inst.)
- SOURCE (Univ. of Stanford)
- LocusLink (National Center for Biotechnology Information)
Genome Annotation Systems
- Ensembl Genome BrowserAutomatically Annotated Genomes (EMBL-EBI and Wellcome Trust Sanger Inst.)
- UniGene Automatic partitioning of GenBank sequences (NCBI)
- Golden Path / UCSC (Univ. of California, Santa Cruz)
Specialized DBs
- CGAP Cancer Genes (National Cancer Institute)
- Clone Registry Clone Collections (National Center for Biotechnology Information)
- I.M.A.G.E Clone Collections (Image Consortium)
- DBGET H.sapiens, retrieval system (Univ. of Kyoto)
- DIP Interacting Proteins (Univ. of California)
- GDB (Human Genome Organization)
- KEGG Functional Db (Univ. of Kyoto)
- MGI Mouse Genome (Jackson Lab.)
- OMIM Inherited Diseases (National Center for Biotechnology Information)
- SWISS-PROT Protein Db (Swiss Institute of Bioinformatics)
- PEDANT Protein Db (Forschungszentrum f. Umwelt & Gesundheit)
- List with SNP-Databases
- Reactome, The Genome Knowledgebase (EBI)
Microarray-DBs
- ArrayExpress (European Bioinformatic Institute)
- Gene Expression Omnibus (National Center for Biotechnology Information)
- maxd (Univ. of Manchester)
- SMD (Univ. of Stanford)
Sources and more links
[1] Weizmann institute of Science[2] George Mason university: Links and introduction
[3] Wikiverse.org - World of Knowledge
© F. Kokocinski, 1999 - 2008
no warranty or liability for content and contents of linked pages
