Landscape of transcription in human cells
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, et al.Nature 2012 489(7414):101-8
Eukaryotic cells make many types of primary and processed RNAs that are found
either in specific subcellular compartments or throughout the cells. A complete
catalogue of these RNAs is not yet available and their characteristic subcellular
localizations are also poorly understood. Because RNA represents the direct
output of the genetic information encoded by genomes and a significant proportion
of a cell's regulatory capabilities are focused on its synthesis, processing,
transport, modification and translation, the generation of such a catalogue is
crucial for understanding genome function. Here we report evidence that
three-quarters of the human genome is capable of being transcribed, as well as
observations about the range and levels of expression, localization, processing
fates, regulatory regions and modifications of almost all currently annotated and
thousands of previously unannotated RNAs. These observations, taken together,
prompt a redefinition of the concept of a gene.
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